INDRA Database modules

• The Client
  • The Principal Database Client
    • Access Readings and Text Content (indra_db.client.principal.content)
    • Submit and Retrieve Curations (indra_db.client.principal.curation)
    • Get Raw Statements (indra_db.client.principal.raw_statements)
  • The Readonly Client
    • Construct composable queries (indra_db.client.readonly.query)
  • Miscellaneous Client APIs (Mostly Deprecated)
    • Get Datasets (indra_db.client.datasets)
    • Get Statements (indra_db.client.statements)
• Pipeline Management CLI
  • indra-db
    • content
    • dump
    • kb
    • pa
    • pipeline-stats
    • reading
    • xdd
• Pipeline CLI Implementations
  • Content (indra_db.cli.content)
  • Reading (indra_db.cli.reading)
  • PreAssembly (indra_db.cli.preassembly)
  • Knowledge Bases (indra_db.cli.knowledgebase)
  • Static Dumps (indra_db.cli.dump)
• Database Integrated Reading Tools
  • The Database Readers (indra_db.reading.read_db)
  • The Database Script for Running on AWS (indra_db.reading.read_db_aws)
  • A Class to Manage and Monitor AWS Batch Jobs (indra_db.reading.submitter)
• Database Integrated Preassembly Tools
  • Database Preassembly (indra_db.preassembly.preassemble_db)
  • A Class to Manage and Monitor AWS Batch Jobs (indra_db.preassembly.submitter)
• Database Schemas
  • Principal Database Schema (indra_db.schemas.principal_schema)
    • The Principal Schema
  • Readonly Database Schema (indra_db.schemas.readonly_schema)
  • Class Mix-ins (indra_db.schemas.mixins)
  • Indexes (indra_db.schemas.indexes)
• Utilities
  • Database Session Constructors (indra_db.util.constructors)
  • Scripts to Get Content (indra_db.util.content_scripts)
  • Distilling Raw Statements (indra_db.util.distill_statements)
  • Script to Create a SIF Dump (indra_db.util.dump_sif)
  • General Helper Functions (indra_db.util.helpers)
  • Routines for Inserting Statements and Content (indra_db.util.insert)
• Some Miscellaneous Modules
  • Low Level Database Interface (indra_db.databases)
  • Belief Calculator (indra_db.belief)